Open Bioimaging Practices Meetup, November 2026
Date & time: 19. November 2026, 4pm CET
Location: To be confirmed, likely room 0.61 at the Friedrich Miescher Institute, Fabrikstrasse 24, 4056 Basel.
Virtual participation: Join this Zoom call
If you are attending in person or want to get email updates about the event series:Please register here
The November 2026 Open Bioimaging Practices Meetup will focus on OME-Zarr in the Spatial OMICs context. We'll hear from both the Python side of SpatialData and its applications, as well as about spatialdataR and its applications for handling Spatial OMICs data with OME-Zarr.
Invited speakers:
Program:
16:00 - 16:10 Introduction
16:10 - 16:30 Luca Marconato (& additional SpatialData member): Spatial Data in Python, how it works with OME-Zarr & current developments
16:30 - 16:50 Reto Gerber: User story: Spatial Transcriptomics to investigate endometrial regeneration
16:50 - 17:00 Q&A
17:00 - 17:20 Helena Crowell: spatialdataR, how it works with OME-Zarr & current developments
17:20 - 17:40 Charlotte Soneson: User story: Using SpatialData & OME-Zarr in R at the FMI
17:40 - 18:15 Q&A and discussion
18:15 onwards: Drinks & snacks